XRPI : A Data Driven Model for Predicting RNA-Protein Interactions based on Gradient Boosting Machine

 

XRPI is an RNA protein interaction prediction tool developed using extreme gradient boosting (XGBoost) and data driven parameters. The binaries for running the program are provided below. Please follow the instructions provided along with the binaries to run the program. A web server link is also provided.

 

The data sets used in training the ML algorithms are given in the hyperlink below. The external data sets (NPInter v3.0 golden data set and Telopin dataset) used for validating XRPI are also provided.

 

download XRPI

 

If the above links don't work, please drop an e-mail to Ravi (aduri@goa.bits-pilani.ac.in).

 

Citation: 

Jain DS, Gupte SR, Aduri R. “A Data Driven Model for Predicting RNA-Protein Interactions based on Gradient Boosting Machine” Sci. Rep. 8: 9552 (2018; DOI: 10.1038/s41598-018-27814-2)

 

 

 

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