[* Corresponding Author]
Redkar S,
Mondal S*, Joseph A, Hareesha KS*. (
2020) A Machine Learning Approach for Drug-target Interaction Prediction using Wrapper Feature Selection and Class Balancing.
Mol Inform. 39(5):e1900062.
Kumar M, Martin A, Nirgude S, Chaudhary B,
Mondal S, Sarkar A. (
2020) Quinacrine inhibits GSTA1 activity and induces apoptosis through G 1/S arrest and generation of ROS in human non-small cell lung cancer cell lines.
Oncotarget. 11(18):1603-1617.
Pai PP, Dattatreya RK,
Mondal S*. (
2017) Ensemble Architecture for Prediction of Enzyme-ligand Binding Residues Using Evolutionary Information.
Mol Inform. 36(11).
Pai PP, Dash T*,
Mondal S*. (
2017) Sequence-based discrimination of protein-RNA interacting residues using a probabilistic approach.
J Theor Biol. 418:77-83.
Pathan J,
Mondal S, Sarkar A, Chakrabarty D. (
2017) Daboialectin, a C-type lectin from Russell's viper venom induces cytoskeletal damage and apoptosis in human lung cancer cells
in vitro.
Toxicon 127:11-21.
Pai PP,
Mondal S*. (
2016) Intriguing cystine-knot miniproteins in drug design and therapeutics.
Toxinology. Toxins and Drug Discovery, Editor-in-Chief: Gopalakrishnakone P, Publisher: Springer,
Pai PP,
Mondal S*. (
2016) MOWGLI: prediction of protein-MannOse interacting residues With ensemble classifiers usinG evoLutionary Information.
J Biomol Struct Dyn. 34:2069-2083.
Pai PP, Ranjani SSS,
Mondal S*. (
2015) PINGU: PredIction of eNzyme catalytic residues usinG seqUence information.
PLoS ONE 10:e0135122.
Pai PP,
Mondal S*. (
2015) Computational approaches for animal toxins to aid drug discovery.
Toxinology. Toxins and Drug Discovery, Editor-in-Chief: Gopalakrishnakone P, Publisher: Springer,
doi:10.1007/978-94-007-6726-3_20-1 (
book chapter).
Mir MA, Arumugam M,
Mondal S, Rajeswari HS, Ramakumar S, Ajitkumar P. (
2015)
Mycobacterium tuberculosis Cell Division Protein, FtsE, is an ATPase in Dimeric Form.
Protein J. 34:35-47.
Dhole K, Singh G, Pai PP,
Mondal S*. (
2014) Sequence-based prediction of protein-protein interaction sites with L1-logreg classifier.
J Theor Biol. 348:47-54.
Mondal S*, Pai PP. (
2014) Chou's pseudo amino acid composition improves sequence-based antifreeze protein prediction.
J Theor Biol. 356:30-35.
Singh G, Dhole K, Pai PP,
Mondal S*. (
2014) SPRINGS: Prediction of Protein-Protein Interaction Sites Using Artificial Neural Networks.
PeerJ PrePrints 2:e266v2, doi:10.7287/peerj.preprints.266v2.
Before joining BITS-Pilani
Mondal S, Nagao C, Mizuguchi K. (2010) Detecting subtle functional differences in ketopantoate reductase and related enzymes using a rule-based approach with sequence-structure homology recognition scores.
Protein Engineering Design and Selection (PEDS) 23:859-869.
Mondal S,
Mizuguchi K. (2009) Structural insights into the enzyme mechanism of a
new family of D-2-hydroxyacid dehydrogenases, a close homolog of
2-ketopantoate reductase.
Genome Informatics 23:98-105.
Mondal S,
Babu RM, Bhavna R, Ramakumar S. (2007) In silico detection of binding
mode of J-superfamily conotoxin pl14a with Kv1.6 channel.
In Silico Biol. 7:0018.
Mondal S,
Bhavna R, Babu RM, Ramakumar S. (2006) Pseudo amino acid composition
and multi-class support vector machines approach for conotoxin
superfamily classification.
J Theor Biol. 243:252-260.
Mondal S, Babu RM, Bhavna R, Ramakumar S. (2006) I-conotoxin superfamily revisited.
J Pept Sci. 12:679-685.
Mondal S, Vijayan R, Shichina K, Babu RM, Ramakumar S. (2005) I-superfamily conotoxins: sequence and structure analysis.
In Silico Biol. 5:557-571.
Mondal S,
Narasegowda RS, Nagaraj B, Yathirajan HS, Narasimhamurthy T, Rathore
RS. (2005) 2,2’-Dipropylmalonic acid: intermolecular association via
strong O-H…O hydrogen bonds.
Acta CrystE. E61, o151-o153.
Narasegowda RS, Sony SMM,
Mondal S,
Nagaraj B, Yathirajan HS, Narasimhamurthy T, Charles P, Ponnuswamy MN,
Nethaji M, Rathore RS. (2005) 2,2’-Diaminodibenzyl: a rare case of
crystallographically non-compliant molecular symmetry.
Acta CrystE. E61, o843-o845.
Fernando SA, Selvarani P, Das S, Kumar ChK,
Mondal S, Ramakumar S, Sekar K. (2004) THGS: a web-based database of Transmembrane Helices in Genome Sequences.
Nucleic Acids Res. 32 Database issue:D125-128.
Mondal S,
Jaishankar SP, Ramakumar S. (2003) Role of context in the relationship
between form and function: structural plasticity of some PROSITE
patterns.
Biochem Biophys Res Commun. 305:1078-1084.