• Nishit Savla, Soumya Pandit, Namita Khanna, Abhilasha Singh Mathuriya, Sokhee P. Jung.Microbially Powered Electrochemical Systems Coupled with Membrane-based Technology for Sustainable Desalination and Efficient Wastewater Treatment. J Korean Soc Environ Eng 2020;42(7): 360-380.
•  Lindblad P, Fuente D, Borbe F, Cicchi B, Conejero JA, Couto N, Celešnik H, Diano MM, Dolinar M, Esposito S, Evans C, Ferreira EA, Keller J, Khanna N, et al. (2019). CyanoFactory, a European consortium to develop technologies needed to advance cyanobacteria as chassis for production of chemicals and fuels. Algal Research, 41, 101510.
• Junaid, S., Khanna, N., Lindbald, P., Ahmed, M., (2019) Multifacet Biofuel Production by Microalgal isolates from Pakistan. Biofuels, Bioproducts & Biorefining, DOI: 10.1002/bbb. (Featured article)
• Wegelius, A*., Khanna, N*., Emsieu, C., Barone, G.D., Pinto., F., Tamagnini, P., Lindblad, P., Berggren, G (2018) Generation of a functional, semisynthetic [FeFe]-hydrogenase in a photosynthetic microorganism. Energy and Environmental Science, 11, 3163-3167.  *(Equal contribution) (IF: 29.5)
• Khanna, N., Mészáros, L.S, Emsieu, C., Lindblad, P., Berggren, G (2017) In vivo activation of an apo-metalloenzyme using synthetic complexes. Energy and Environmental Science, 10, 1563-1567.  (IF: 29.5)
• Raleiras, P., *Khanna, N.*, Miranda, H., Mészáros, L.S.,  Krassen, H., Ho, F.,  Battchikova, N.,  Aro, E.M.,   Magnuson, A., Lindblad, P., Styring, S. (2015) Enhanced hydrogen production by engineering HupSL of Nostoc Punctiforme. Energy and Environmental Science.9, pp. 581-594 *(Equal contribution) (IF: 29.5)
• Khanna, N; Lindblad, P. (2015). Cyanobacterial hydrogenases and hydrogen metabolism revisited: Recent progress and future prospects. International Journal of Molecular Sciences. 16(5), pp. 10537-10561.
• Khanna, N; Ghosh, A.K., Huntemann, M., Deshpande, S; Han, J, Chen, A., et al., (2013) Complete genome sequence of Enterobacter sp. IIT-BT 08: A potential microbial strain for high rate hydrogen production. Standards in Genomic Sciences, 9(2), pp.359-369.
• Khetkorn, W; Khanna, N; Incharoensakdi, A; Lindblad, P. (2013) Metabolic and genetic engineering for enhanced hydrogen production. Biofuels, 4(5), pp. 535-561.
• Khanna, N; Kumar, K; Todi, S; Das, D. (2012) Characteristics of cured and wild strains of Enterobacter cloacae IIT-BT 08 for the improvement of biohydrogen production. International Journal of Hydrogen Energy, 37(16), pp. 11666-11676.
• Khanna, N; Dasgupta, CN; Mishra, P; Das, D. (2011) Homologous over expression of [FeFe] hydrogenase in Enterobacter cloacae IIT-BT 08 to enhance hydrogen gas production from cheese whey. International Journal of Hydrogen Energy, 36 (24), pp. 15573-15582.
• Khanna, N; Kotay, SM; Gilbert, J.J; Das, D. (2011) Improvement of biohydrogen production by Enterobacter cloacae IIT-BT 08 under regulated Ph. Journal of Biotechnology, 152 (2), pp.9-15.
•  Khanna, N; Veziroglu TN. (2008) Recent developments in biological hydrogen production processes. Chemical Industry and chemical engineering Quarterly, 14 (2), pp. 57- 67.

Chapters published in edited books

•  Pramod R,  Patel V,  Khanna N,  Mathuriya AS, Pandit S (2020). Fundamentals of Biosensor application in environmental pollutant monitoring. In: Removal of Emerging Contaminants through Microbial Processes. Ed: Maulin P Shah (In press)
• Babu RP, Pandit S, Khanna N, Chowdhary P, Singh AM, Fosso-Kankeu E (2020). Importance of Bacterial Biofilm in Bioremediation. In: Contaminants and Clean Technologies. Ed: Pankaj Chowdhary, Abhay Raj, Chapter 9, Vol 1, pp. 149-164, CRC press
• Khanna, N; Sridhar, A; Pandit, S; Subramanian, R; Fosso-Kankeu E. (2019) Phycoremediation: A solar driven wastewater purification system. In: Nano and Bio-Based Technologies for Wastewater Treatment: Prediction and Control Tools for the Dispersion of Pollutants in the Environmen. Ed:  Fosso-Kanke E, Chapter 11, Vol 1, pp.371-425, Scrivener, Beverly, MA, USA.
• Balachandar, G; Khanna, N; Das D. (2019) Biohydrogen production by organic wastes. In: Biohydrogen, (Eds: A Pandey, J S Chang, P C Hallenbeck and C Larroche), Elsevier, CA, USA, Vol 2, pp. 79-122
•  Miao, R; Wegelius, A; Durall, C; Liang, F; Khanna, N; Lindblad, P. (2017) Engineering cyanobacteria for biofuel production. In Modern Topics in the Phototrophic Prokaryotes, (Ed: PC Hallenbeck), Springer (Accepted).
• Khanna, N; Raielers, P; Lindblad P. (2016) Fundamentals and recent advancements in nitrogen fixation and hydrogen production from cyanobacteria. In: Microalgal Physiology, (Eds: M Borowitzka, J Beardall, & JA Raven), Springer, Switzerland, pp. 101-127.
• Khanna, N. (2015) Perspectives on algal engineering for enhanced biofuel production. In: Algal Biorefinery: an integrated approach, (Ed: D Das), M/s. Capital Publishing Company and M/s.  and Springer, New Delhi, India, pp. 77-101.
• Khanna, N.; Lindblad, P. (2015). Engineering of cyanobacteria for increased hydrogen production. In: Biohydrogen, (Ed: M Rögner), Walter de Gruyter GmbH, Berlin, Germany, pp. 175-190.
• Balachandar, G; Khanna, N; Das, D. (2013) Biohydrogen production by organic wastes. In: Biohydrogen, (Eds: A Pandey, J S Chang, P C Hallenbeck and C Larroche), Elsevier, CA, USA, pp. 103-144.
• Khanna, N; Das, D. (2012) Biohydrogen Production by Dark Fermentation. In: Energy and Environment, (Eds: P Lund; S Basu), Wiley-Blackwell Publication, USA, pp. 401-421.

Khanna, N., Das, D., Dasgupta, NC. (Feb 21, 2014) Biohydrogen Production: Fundamentals and Technology Advances, CRC Press, Boca Raton, USA, pp. 408 (ISBN 9781466517998).